PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g007640.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 278aa    MW: 31501.9 Da    PI: 8.3814
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g007640.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013217239223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       +Cp C+ +Fs+   L  H ++ H
  Sopen04g007640.1 217 PCPQCHLRFSTVRALIDHVQKvH 239
                       5*****************99988 PP

2zf-C2H215.45.2e-05251273223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       +Cp C+k F+++  L+ H  + H
  Sopen04g007640.1 251 VCPRCSKGFRDPVALVEHVEReH 273
                       7*****************99888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.18E-10459No hitNo description
Gene3DG3DSA:4.10.1110.103.2E-91053IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.3761055IPR000058Zinc finger, AN1-type
SMARTSM001540.00621352IPR000058Zinc finger, AN1-type
PfamPF014286.5E-121351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.3E-1090149IPR000058Zinc finger, AN1-type
SuperFamilySSF1183102.75E-993149No hitNo description
PROSITE profilePS510397.95398145IPR000058Zinc finger, AN1-type
SMARTSM001540.007101142IPR000058Zinc finger, AN1-type
PfamPF014283.7E-8101141IPR000058Zinc finger, AN1-type
SMARTSM003550.036216239IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280218239IPR007087Zinc finger, C2H2
SMARTSM003557.1250273IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974250278IPR007087Zinc finger, C2H2
PROSITE patternPS000280252273IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGTPEFPNLG KHCSVEDCRQ IDFLPFTCDC CFKVYCLDHR SYIRHQCPTA NKNNVTVVIC  60
PLCAKGVRLN PVEDPNITWE SHVNTECDPS NYEKATKKKK CPVPRCKELL TFSNTIKCRD  120
CTVDHCLKHR FGPDHSCPGP KKPEATFQFM NFLNGSKEES KKAQPTTTSR WTTSLLKVVS  180
SVKEKFNNEF NQPQQTGQSS RATNHSVTTN NSSQVEPCPQ CHLRFSTVRA LIDHVQKVHE  240
KNGVMNMTID VCPRCSKGFR DPVALVEHVE REHKGSSM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072096.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like
SwissprotQ8VZ421e-119SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLK4BQ590.0K4BQ59_SOLLC; Uncharacterized protein
STRINGSolyc04g015570.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53112237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-121C2H2 family protein